CRAN Package Check Results for Maintainer ‘Selcuk Korkmaz <selcukorkmaz at gmail.com>’

Last updated on 2024-05-15 01:49:38 CEST.

Package	ERROR	OK
genSEIR		12
MVN		12
PubChemR		12
rPDBapi	8	5

Package genSEIR

Current CRAN status: OK: 12

Package MVN

Current CRAN status: OK: 12

Package PubChemR

Current CRAN status: OK: 12

Package rPDBapi

Current CRAN status: ERROR: 8, OK: 5

Additional issues

M1mac

Version: 1.1
Check: examples
Result: ERROR Running examples in ‘rPDBapi-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: perform_search > ### Title: Perform a Search in the RCSB PDB > ### Aliases: perform_search > > ### ** Examples > > search_operator = InOperator(value=c("Mus musculus", "Homo sapiens"), + attribute="rcsb_entity_source_organism.taxonomy_lineage.name") > return_type = "NON_POLYMER_ENTITY" > results = perform_search(search_operator, return_type) Querying RCSB Search with the following parameters: { "query": { "type": "terminal", "service": "text", "parameters": { "attribute": "rcsb_entity_source_organism.taxonomy_lineage.name", "operator": "in", "value": ["Mus musculus", "Homo sapiens"] } }, "request_options": { "return_all_hits": true }, "return_type": "non_polymer_entity" } Error in perform_search_with_graph(query_object = search_operator, return_type = return_type, : Request failed with:{"timestamp":"2024-05-14T07:00:30.134+00:00","status":415,"error":"Unsupported Media Type","path":"/rcsbsearch/v2/query"} Calls: perform_search -> perform_search_with_graph Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.1
Check: examples
Result: ERROR Running examples in ‘rPDBapi-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: perform_search > ### Title: Perform a Search in the RCSB PDB > ### Aliases: perform_search > > ### ** Examples > > search_operator = InOperator(value=c("Mus musculus", "Homo sapiens"), + attribute="rcsb_entity_source_organism.taxonomy_lineage.name") > return_type = "NON_POLYMER_ENTITY" > results = perform_search(search_operator, return_type) Querying RCSB Search with the following parameters: { "query": { "type": "terminal", "service": "text", "parameters": { "attribute": "rcsb_entity_source_organism.taxonomy_lineage.name", "operator": "in", "value": ["Mus musculus", "Homo sapiens"] } }, "request_options": { "return_all_hits": true }, "return_type": "non_polymer_entity" } Error in perform_search_with_graph(query_object = search_operator, return_type = return_type, : Request failed with:{"timestamp":"2024-05-14T00:41:27.453+00:00","status":415,"error":"Unsupported Media Type","path":"/rcsbsearch/v2/query"} Calls: perform_search -> perform_search_with_graph Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.1
Check: examples
Result: ERROR Running examples in ‘rPDBapi-Ex.R’ failed The error most likely occurred in: > ### Name: perform_search > ### Title: Perform a Search in the RCSB PDB > ### Aliases: perform_search > > ### ** Examples > > search_operator = InOperator(value=c("Mus musculus", "Homo sapiens"), + attribute="rcsb_entity_source_organism.taxonomy_lineage.name") > return_type = "NON_POLYMER_ENTITY" > results = perform_search(search_operator, return_type) Querying RCSB Search with the following parameters: { "query": { "type": "terminal", "service": "text", "parameters": { "attribute": "rcsb_entity_source_organism.taxonomy_lineage.name", "operator": "in", "value": ["Mus musculus", "Homo sapiens"] } }, "request_options": { "return_all_hits": true }, "return_type": "non_polymer_entity" } Error in perform_search_with_graph(query_object = search_operator, return_type = return_type, : Request failed with:{"timestamp":"2024-05-12T20:48:51.468+00:00","status":415,"error":"Unsupported Media Type","path":"/rcsbsearch/v2/query"} Calls: perform_search -> perform_search_with_graph Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.1
Check: examples
Result: ERROR Running examples in ‘rPDBapi-Ex.R’ failed The error most likely occurred in: > ### Name: perform_search > ### Title: Perform a Search in the RCSB PDB > ### Aliases: perform_search > > ### ** Examples > > search_operator = InOperator(value=c("Mus musculus", "Homo sapiens"), + attribute="rcsb_entity_source_organism.taxonomy_lineage.name") > return_type = "NON_POLYMER_ENTITY" > results = perform_search(search_operator, return_type) Querying RCSB Search with the following parameters: { "query": { "type": "terminal", "service": "text", "parameters": { "attribute": "rcsb_entity_source_organism.taxonomy_lineage.name", "operator": "in", "value": ["Mus musculus", "Homo sapiens"] } }, "request_options": { "return_all_hits": true }, "return_type": "non_polymer_entity" } Error in perform_search_with_graph(query_object = search_operator, return_type = return_type, : Request failed with:{"timestamp":"2024-05-14T03:48:33.433+00:00","status":415,"error":"Unsupported Media Type","path":"/rcsbsearch/v2/query"} Calls: perform_search -> perform_search_with_graph Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.1
Check: examples
Result: ERROR Running examples in 'rPDBapi-Ex.R' failed The error most likely occurred in: > ### Name: perform_search > ### Title: Perform a Search in the RCSB PDB > ### Aliases: perform_search > > ### ** Examples > > search_operator = InOperator(value=c("Mus musculus", "Homo sapiens"), + attribute="rcsb_entity_source_organism.taxonomy_lineage.name") > return_type = "NON_POLYMER_ENTITY" > results = perform_search(search_operator, return_type) Querying RCSB Search with the following parameters: { "query": { "type": "terminal", "service": "text", "parameters": { "attribute": "rcsb_entity_source_organism.taxonomy_lineage.name", "operator": "in", "value": ["Mus musculus", "Homo sapiens"] } }, "request_options": { "return_all_hits": true }, "return_type": "non_polymer_entity" } Error in perform_search_with_graph(query_object = search_operator, return_type = return_type, : Request failed with:{"timestamp":"2024-05-10T11:00:57.215+00:00","status":415,"error":"Unsupported Media Type","path":"/rcsbsearch/v2/query"} Calls: perform_search -> perform_search_with_graph Execution halted Flavor: r-devel-windows-x86_64

Version: 1.1
Check: examples
Result: ERROR Running examples in ‘rPDBapi-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: perform_search > ### Title: Perform a Search in the RCSB PDB > ### Aliases: perform_search > > ### ** Examples > > search_operator = InOperator(value=c("Mus musculus", "Homo sapiens"), + attribute="rcsb_entity_source_organism.taxonomy_lineage.name") > return_type = "NON_POLYMER_ENTITY" > results = perform_search(search_operator, return_type) Querying RCSB Search with the following parameters: { "query": { "type": "terminal", "service": "text", "parameters": { "attribute": "rcsb_entity_source_organism.taxonomy_lineage.name", "operator": "in", "value": ["Mus musculus", "Homo sapiens"] } }, "request_options": { "return_all_hits": true }, "return_type": "non_polymer_entity" } Error in perform_search_with_graph(query_object = search_operator, return_type = return_type, : Request failed with:{"timestamp":"2024-05-12T14:09:48.189+00:00","status":415,"error":"Unsupported Media Type","path":"/rcsbsearch/v2/query"} Calls: perform_search -> perform_search_with_graph Execution halted Flavor: r-release-linux-x86_64

Version: 1.1
Check: examples
Result: ERROR Running examples in 'rPDBapi-Ex.R' failed The error most likely occurred in: > ### Name: perform_search > ### Title: Perform a Search in the RCSB PDB > ### Aliases: perform_search > > ### ** Examples > > search_operator = InOperator(value=c("Mus musculus", "Homo sapiens"), + attribute="rcsb_entity_source_organism.taxonomy_lineage.name") > return_type = "NON_POLYMER_ENTITY" > results = perform_search(search_operator, return_type) Querying RCSB Search with the following parameters: { "query": { "type": "terminal", "service": "text", "parameters": { "attribute": "rcsb_entity_source_organism.taxonomy_lineage.name", "operator": "in", "value": ["Mus musculus", "Homo sapiens"] } }, "request_options": { "return_all_hits": true }, "return_type": "non_polymer_entity" } Error in perform_search_with_graph(query_object = search_operator, return_type = return_type, : Request failed with:{"timestamp":"2024-05-11T14:09:30.237+00:00","status":415,"error":"Unsupported Media Type","path":"/rcsbsearch/v2/query"} Calls: perform_search -> perform_search_with_graph Execution halted Flavor: r-release-windows-x86_64

Version: 1.1
Check: examples
Result: ERROR Running examples in 'rPDBapi-Ex.R' failed The error most likely occurred in: > ### Name: perform_search > ### Title: Perform a Search in the RCSB PDB > ### Aliases: perform_search > > ### ** Examples > > search_operator = InOperator(value=c("Mus musculus", "Homo sapiens"), + attribute="rcsb_entity_source_organism.taxonomy_lineage.name") > return_type = "NON_POLYMER_ENTITY" > results = perform_search(search_operator, return_type) Querying RCSB Search with the following parameters: { "query": { "type": "terminal", "service": "text", "parameters": { "attribute": "rcsb_entity_source_organism.taxonomy_lineage.name", "operator": "in", "value": ["Mus musculus", "Homo sapiens"] } }, "request_options": { "return_all_hits": true }, "return_type": "non_polymer_entity" } Error in perform_search_with_graph(query_object = search_operator, return_type = return_type, : Request failed with:{"timestamp":"2024-05-10T13:56:52.437+00:00","status":415,"error":"Unsupported Media Type","path":"/rcsbsearch/v2/query"} Calls: perform_search -> perform_search_with_graph Execution halted Flavor: r-oldrel-windows-x86_64